Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007974.1 Corchorus olitorius cultivar O-4 contig08001, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1903
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31


Found at i:863 original size:9 final size:9

Alignment explanation


    Indices: 849--874  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

        839 AAACGATTGC

                     
        849 TTTGTTTTG
          1 TTTGTTTTG

                     
        858 TTTGTTTTG
          1 TTTGTTTTG

                    
        867 TTTGTTTT
          1 TTTGTTTT

        875 AGTGCTTATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81


Consensus pattern (9 bp):   
TTTGTTTTG
Done.