Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007978.1 Corchorus olitorius cultivar O-4 contig08005, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1353
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:755 original size:19 final size:19

Alignment explanation


    Indices: 735--771  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        725 AATTAATTAT

                               
        735 TTTA-ATATTATATTTTTA
          1 TTTATATATTATATTTTTA

                               
        753 TTTATATATTATATTTTTA
          1 TTTATATATTATATTTTTA

        772 CTTAAAAATT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  18    4  0.22
  19   14  0.78

ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68


Consensus pattern (19 bp):   
TTTATATATTATATTTTTA

Found at i:782 original size:19 final size:19

Alignment explanation


    Indices: 741--782  Score: 57
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        731 TTATTTTAAT

                        *   * *
        741 ATTATATTTTTATTTATAT
          1 ATTATATTTTTACTTAAAA

                               
        760 ATTATATTTTTACTTAAAA
          1 ATTATATTTTTACTTAAAA

                
        779 ATTA
          1 ATTA

        783 CTCCTAATTA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60


Consensus pattern (19 bp):   
ATTATATTTTTACTTAAAA
Done.