Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007984.1 Corchorus olitorius cultivar O-4 contig08011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1863
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35


Found at i:886 original size:29 final size:29

Alignment explanation


    Indices: 851--910  Score: 77
    Period size: 29  Copynumber: 2.1  Consensus size: 29

        841 ACTTGTAGCG

                   *    * *               
        851 TTTGGACGTTTTGCTCCCTGAACTTT-AAT
          1 TTTGGACATTTTACCCCCTGAA-TTTCAAT

                                         
        880 TTTGGACATTTTACCCCCTGAATTTCAAT
          1 TTTGGACATTTTACCCCCTGAATTTCAAT

              
        909 TT
          1 TT

        911 CTGTCCTAAC


Statistics
Matches: 27,  Mismatches: 3, Indels: 2
        0.84            0.09        0.06

Matches are distributed among these distances:
  28    3  0.11
  29   24  0.89

ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45


Consensus pattern (29 bp):   
TTTGGACATTTTACCCCCTGAATTTCAAT
Done.