Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007988.1 Corchorus olitorius cultivar O-4 contig08015, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 878

Length: 1464
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.22


Found at i:567 original size:76 final size:76

Alignment explanation


    Indices: 457--727  Score: 456
    Period size: 76  Copynumber: 3.6  Consensus size: 76

        447 AAATGTCCAT

                                         *                                   
        457 GCAGACGCTGCTCACCCAACGGCTGAGTGTCTAGACTGGCACCCCCGTTCGTCTATTTGTGAGAC
          1 GCAGACGCTGCTCACCCAACGGCTGAGTGCCTAGACTGGCACCCCCGTTCGTCTATTTGTGAGAC

                       
        522 AAAGCGTTCAC
         66 AAAGCGTTCAC

                                                                             
        533 GCAGACGCTGCTCACCCAACGGCTGAGTGCCTAGACTGGCACCCCCGTTCGTCTATTTGTGAGAC
          1 GCAGACGCTGCTCACCCAACGGCTGAGTGCCTAGACTGGCACCCCCGTTCGTCTATTTGTGAGAC

                       
        598 AAAGCGTTCAC
         66 AAAGCGTTCAC

                                 *                                    *      
        609 GCAGACGCTGCTCACCCAACGACTGAGTGCCTAGACTGGCACCCCCGTTCGTCTATTTTTGAGAC
          1 GCAGACGCTGCTCACCCAACGGCTGAGTGCCTAGACTGGCACCCCCGTTCGTCTATTTGTGAGAC

                      *
        674 --AGCGTTCAT
         66 AAAGCGTTCAC

            *              ** *                          
        683 ACAGACGCTGCTCACTTAGCGGCTGAGTGCCTAGACTGGCACCCC
          1 GCAGACGCTGCTCACCCAACGGCTGAGTGCCTAGACTGGCACCCC

        728 TGTCCGTCCT


Statistics
Matches: 186,  Mismatches: 9, Indels: 2
        0.94            0.05        0.01

Matches are distributed among these distances:
  74   48  0.26
  76  138  0.74

ACGTcount: A:0.21, C:0.33, G:0.25, T:0.22


Consensus pattern (76 bp):   
GCAGACGCTGCTCACCCAACGGCTGAGTGCCTAGACTGGCACCCCCGTTCGTCTATTTGTGAGAC
AAAGCGTTCAC
Done.