Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01007991.1 Corchorus olitorius cultivar O-4 contig08018, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2390
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.35


Found at i:1081 original size:27 final size:27

Alignment explanation


    Indices: 1029--1086  Score: 64
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1019 GTTTTTTTTT

                              ***      
       1029 AAATGGGTAGTTTTTTTTTTGAGATAA
          1 AAATGGGTAGTTTTTTTTAAAAGATAA

                                       *
       1056 AAATGGGTAG-TTTTTTTAAAATGATAT
          1 AAATGGGTAGTTTTTTTTAAAA-GATAA

                
       1083 AAAT
          1 AAAT

       1087 AAAATTTAAA


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  26    8  0.31
  27   18  0.69

ACGTcount: A:0.36, C:0.00, G:0.19, T:0.45


Consensus pattern (27 bp):   
AAATGGGTAGTTTTTTTTAAAAGATAA
Done.