Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008002.1 Corchorus olitorius cultivar O-4 contig08029, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 868

Length: 1447
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31


Found at i:1196 original size:32 final size:32

Alignment explanation


    Indices: 1155--1215  Score: 104
    Period size: 32  Copynumber: 1.9  Consensus size: 32

       1145 AAATATGTTT

                              *             
       1155 GAAAAATAAGGATATAATGGTCGATTCAATTA
          1 GAAAAATAAGGATATAATAGTCGATTCAATTA

                       *                 
       1187 GAAAAATAAGGGTATAATAGTCGATTCAA
          1 GAAAAATAAGGATATAATAGTCGATTCAA

       1216 AAGTTTTACA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  32   27  1.00

ACGTcount: A:0.48, C:0.07, G:0.20, T:0.26


Consensus pattern (32 bp):   
GAAAAATAAGGATATAATAGTCGATTCAATTA

Found at i:1246 original size:2 final size:2

Alignment explanation


    Indices: 1239--1276  Score: 58
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       1229 CTCGTACTTT

                               *                                    
       1239 TA TA TA TA GTA TA GA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1277 GCTCGGTTCC


Statistics
Matches: 33,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
   2   31  0.94
   3    2  0.06

ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47


Consensus pattern (2 bp):   
TA

Done.