Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008008.1 Corchorus olitorius cultivar O-4 contig08035, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 895

Length: 1493
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:335 original size:30 final size:30

Alignment explanation


    Indices: 301--372  Score: 144
    Period size: 30  Copynumber: 2.4  Consensus size: 30

        291 AACACCCAAT

                                          
        301 CAACTTCAAATCATTAAAATGTCACAAGAA
          1 CAACTTCAAATCATTAAAATGTCACAAGAA

                                          
        331 CAACTTCAAATCATTAAAATGTCACAAGAA
          1 CAACTTCAAATCATTAAAATGTCACAAGAA

                        
        361 CAACTTCAAATC
          1 CAACTTCAAATC

        373 CTAACCATTC


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   42  1.00

ACGTcount: A:0.49, C:0.22, G:0.06, T:0.24


Consensus pattern (30 bp):   
CAACTTCAAATCATTAAAATGTCACAAGAA

Done.