Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008029.1 Corchorus olitorius cultivar O-4 contig08056, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 708

Length: 1180
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.38


Found at i:520 original size:21 final size:21

Alignment explanation


    Indices: 494--533  Score: 64
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        484 CTGTTTGGCA

                                  
        494 ACTGTACAGATTG-GATTATGT
          1 ACTGTACAGA-TGAGATTATGT

                               
        515 ACTGTACAGATGAGATTAT
          1 ACTGTACAGATGAGATTAT

        534 TAGAGCAGCG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20    2  0.11
  21   16  0.89

ACGTcount: A:0.33, C:0.10, G:0.23, T:0.35


Consensus pattern (21 bp):   
ACTGTACAGATGAGATTATGT

Found at i:607 original size:19 final size:19

Alignment explanation


    Indices: 583--619  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        573 TTTGGTCCCA

                    *          
        583 AAACGGTGGTGAAACGGTC
          1 AAACGGTGATGAAACGGTC

                              
        602 AAACGGTGATGAAACGGT
          1 AAACGGTGATGAAACGGT

        620 TACAGATAAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.35, C:0.14, G:0.35, T:0.16


Consensus pattern (19 bp):   
AAACGGTGATGAAACGGTC
Done.