Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000804.1 Corchorus olitorius cultivar O-4 contig00804, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1196
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40


Found at i:361 original size:16 final size:16

Alignment explanation


    Indices: 340--374  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        330 CCTTTTTTAT

                            
        340 TTTGATTTTGATTTGA
          1 TTTGATTTTGATTTGA

                     **     
        356 TTTGATTTTTTTTTGA
          1 TTTGATTTTGATTTGA

               
        372 TTT
          1 TTT

        375 TTTGATTTCT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71


Consensus pattern (16 bp):   
TTTGATTTTGATTTGA

Found at i:419 original size:19 final size:19

Alignment explanation


    Indices: 395--433  Score: 69
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        385 AATGATGATT

                         *     
        395 TTTTTTATTATTTTTGGAA
          1 TTTTTTATTATTTGTGGAA

                               
        414 TTTTTTATTATTTGTGGAA
          1 TTTTTTATTATTTGTGGAA

             
        433 T
          1 T

        434 CGACAGAGAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.21, C:0.00, G:0.13, T:0.67


Consensus pattern (19 bp):   
TTTTTTATTATTTGTGGAA
Done.