Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008045.1 Corchorus olitorius cultivar O-4 contig08072, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9627
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34


Found at i:19 original size:2 final size:2

Alignment explanation


    Indices: 13--56  Score: 88
    Period size: 2  Copynumber: 22.0  Consensus size: 2

          3 TATTAGTTAG

                                                                          
         13 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

              
         55 TA
          1 TA

         57 GTGCGTTGCA


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   42  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:1995 original size:16 final size:16

Alignment explanation


    Indices: 1974--2006  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       1964 GTGAAATAAA

                            
       1974 ATAATTAATCTAAATG
          1 ATAATTAATCTAAATG

                     *      
       1990 ATAATTAATTTAAATG
          1 ATAATTAATCTAAATG

             
       2006 A
          1 A

       2007 AATAAAAATA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39


Consensus pattern (16 bp):   
ATAATTAATCTAAATG
Done.