Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008056.1 Corchorus olitorius cultivar O-4 contig08083, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2154
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33


Found at i:499 original size:24 final size:22

Alignment explanation


    Indices: 455--501  Score: 60
    Period size: 24  Copynumber: 2.0  Consensus size: 22

        445 GGGTTAAATC

                                  
        455 TCCTTTTATTTTATTTTCTTTT
          1 TCCTTTTATTTTATTTTCTTTT

                                     
        477 TCCTTTTCCATTTT-TTTTGCTTTT
          1 TCCTTTT--ATTTTATTTT-CTTTT

             
        501 T
          1 T

        502 TTTCTTTTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  22    7  0.32
  23    4  0.18
  24   11  0.50

ACGTcount: A:0.06, C:0.17, G:0.02, T:0.74


Consensus pattern (22 bp):   
TCCTTTTATTTTATTTTCTTTT
Done.