Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000807.1 Corchorus olitorius cultivar O-4 contig00807, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34


Found at i:259 original size:30 final size:30

Alignment explanation


    Indices: 223--316  Score: 188
    Period size: 30  Copynumber: 3.1  Consensus size: 30

        213 TTTTTCCAAT

                                          
        223 ATATTCTCCAAATAAGTAAGTATAATTAAC
          1 ATATTCTCCAAATAAGTAAGTATAATTAAC

                                          
        253 ATATTCTCCAAATAAGTAAGTATAATTAAC
          1 ATATTCTCCAAATAAGTAAGTATAATTAAC

                                          
        283 ATATTCTCCAAATAAGTAAGTATAATTAAC
          1 ATATTCTCCAAATAAGTAAGTATAATTAAC

                
        313 ATAT
          1 ATAT

        317 ACCAAACGAA


Statistics
Matches: 64,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   64  1.00

ACGTcount: A:0.47, C:0.13, G:0.06, T:0.34


Consensus pattern (30 bp):   
ATATTCTCCAAATAAGTAAGTATAATTAAC

Found at i:491 original size:21 final size:22

Alignment explanation


    Indices: 461--501  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

        451 ATTCTTTTTT

                 *         *      
        461 ATTAAGTTTAG-CCCTAATTTC
          1 ATTAAATTTAGTCCCAAATTTC

                                
        482 ATTAAATTTAGTCCCAAATT
          1 ATTAAATTTAGTCCCAAATT

        502 AAAATTTTAT


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   10  0.59
  22    7  0.41

ACGTcount: A:0.34, C:0.17, G:0.07, T:0.41


Consensus pattern (22 bp):   
ATTAAATTTAGTCCCAAATTTC
Done.