Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008079.1 Corchorus olitorius cultivar O-4 contig08106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2276
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25


Found at i:1744 original size:21 final size:21

Alignment explanation


    Indices: 1718--1830  Score: 174
    Period size: 21  Copynumber: 5.4  Consensus size: 21

       1708 TGCTAGAAGT

                                  
       1718 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                *
       1739 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
       1760 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
       1781 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                           *     
       1802 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
       1823 TCATTGGA
          1 TCATTGGA

       1831 ATTGCCTAAG


Statistics
Matches: 87,  Mismatches: 4, Indels: 2
        0.94            0.04        0.02

Matches are distributed among these distances:
  20    2  0.02
  21   85  0.98

ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.