Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000808.1 Corchorus olitorius cultivar O-4 contig00808, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:619 original size:20 final size:20

Alignment explanation


    Indices: 594--634  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        584 GTGGGCTTTT

                                
        594 AAATCAACAATAAAGGAAGG
          1 AAATCAACAATAAAGGAAGG

                                
        614 AAATCAACAATAAAGGAAGG
          1 AAATCAACAATAAAGGAAGG

             
        634 A
          1 A

        635 GATGGGTTTC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.61, C:0.10, G:0.20, T:0.10


Consensus pattern (20 bp):   
AAATCAACAATAAAGGAAGG
Done.