Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008093.1 Corchorus olitorius cultivar O-4 contig08120, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 631

Length: 1052
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35


Found at i:152 original size:12 final size:13

Alignment explanation


    Indices: 134--163  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

        124 GTTTTCTTTA

                         
        134 ATTTTCTTGATTG
          1 ATTTTCTTGATTG

                         
        147 -TTTTCTTGATTG
          1 ATTTTCTTGATTG

                 
        159 ATTTT
          1 ATTTT

        164 AATTGCTAGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67


Consensus pattern (13 bp):   
ATTTTCTTGATTG
Done.