Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008101.1 Corchorus olitorius cultivar O-4 contig08128, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1077
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36


Found at i:251 original size:32 final size:32

Alignment explanation


    Indices: 215--285  Score: 106
    Period size: 32  Copynumber: 2.2  Consensus size: 32

        205 TTCTCACCAG

                      *   *       *   *     
        215 ACGCCGCTATTTAGTGGCGTCTGGGAGAGGAA
          1 ACGCCGCTATATAGCGGCGTCTAGGAAAGGAA

                                            
        247 ACGCCGCTATATAGCGGCGTCTAGGAAAGGAA
          1 ACGCCGCTATATAGCGGCGTCTAGGAAAGGAA

                   
        279 ACGCCGC
          1 ACGCCGC

        286 AATGTAATAT


Statistics
Matches: 35,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  32   35  1.00

ACGTcount: A:0.25, C:0.24, G:0.34, T:0.17


Consensus pattern (32 bp):   
ACGCCGCTATATAGCGGCGTCTAGGAAAGGAA
Done.