Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008102.1 Corchorus olitorius cultivar O-4 contig08129, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 704

Length: 1174
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37


Found at i:628 original size:10 final size:10

Alignment explanation


    Indices: 599--629  Score: 53
    Period size: 10  Copynumber: 3.1  Consensus size: 10

        589 ATAATGGTTG

                     *
        599 TAAAAGCCTG
          1 TAAAAGCCTT

                      
        609 TAAAAGCCTT
          1 TAAAAGCCTT

                      
        619 TAAAAGCCTT
          1 TAAAAGCCTT

             
        629 T
          1 T

        630 GAATTGAATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  10   20  1.00

ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29


Consensus pattern (10 bp):   
TAAAAGCCTT
Done.