Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008104.1 Corchorus olitorius cultivar O-4 contig08131, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1175
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35


Found at i:607 original size:28 final size:28

Alignment explanation


    Indices: 533--607  Score: 100
    Period size: 28  Copynumber: 2.7  Consensus size: 28

        523 TATAGGCATA

                              *         
        533 AAATTACCGTTTTACCCTAAGAATGAGT
          1 AAATTACCGTTTTACCCTTAGAATGAGT

                                         
        561 AAATTACCGTTTTACCCTTAGAA-G-GTT
          1 AAATTACCGTTTTACCCTTAGAATGAG-T

                    *           
        588 AAATTTACAGTTTTACCCTT
          1 AAA-TTACCGTTTTACCCTT

        608 TTAACCTTGT


Statistics
Matches: 43,  Mismatches: 2, Indels: 4
        0.88            0.04        0.08

Matches are distributed among these distances:
  26    1  0.02
  27    5  0.12
  28   37  0.86

ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37


Consensus pattern (28 bp):   
AAATTACCGTTTTACCCTTAGAATGAGT
Done.