Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008105.1 Corchorus olitorius cultivar O-4 contig08132, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 680

Length: 1134
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32


Found at i:446 original size:3 final size:3

Alignment explanation


    Indices: 438--504  Score: 125
    Period size: 3  Copynumber: 22.3  Consensus size: 3

        428 TTCCGATTTT

                                                                           
        438 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

                          *          
        486 ATA ATA ATA ATG ATA ATA A
          1 ATA ATA ATA ATA ATA ATA A

        505 GAGAAAGCAA


Statistics
Matches: 62,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   3   62  1.00

ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33


Consensus pattern (3 bp):   
ATA

Done.