Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008109.1 Corchorus olitorius cultivar O-4 contig08136, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 602

Length: 1004
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30


Found at i:691 original size:21 final size:21

Alignment explanation


    Indices: 667--741  Score: 114
    Period size: 21  Copynumber: 3.6  Consensus size: 21

        657 AAGATGCTAG

                                 
        667 AAGTTCATTGGAGAAGGTTCC
          1 AAGTTCATTGGAGAAGGTTCC

                                 
        688 AAGTTCATTGGAGAAGGTTCC
          1 AAGTTCATTGGAGAAGGTTCC

              **               * 
        709 AAAATCATTGGAGAAGGTTTC
          1 AAGTTCATTGGAGAAGGTTCC

               *        
        730 AAGCTCATTGGA
          1 AAGTTCATTGGA

        742 ATTGCCTAAG


Statistics
Matches: 49,  Mismatches: 5, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   49  1.00

ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28


Consensus pattern (21 bp):   
AAGTTCATTGGAGAAGGTTCC
Done.