Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008111.1 Corchorus olitorius cultivar O-4 contig08138, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 778

Length: 1297
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39


Found at i:1080 original size:18 final size:19

Alignment explanation


    Indices: 1033--1083  Score: 59
    Period size: 20  Copynumber: 2.6  Consensus size: 19

       1023 TTCACATCTA

                              * 
       1033 ATAAGGTTACTAAAAAAACT
          1 ATAAGGTTA-TAAAAAAAAT

                 *              
       1053 ATAGACGTTATAAAAAAAAT
          1 ATA-AGGTTATAAAAAAAAT

                        
       1073 -TAAGGTTATAA
          1 ATAAGGTTATAA

       1084 TTTCAATGTT


Statistics
Matches: 27,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  18    8  0.30
  19    2  0.07
  20   12  0.44
  21    5  0.19

ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27


Consensus pattern (19 bp):   
ATAAGGTTATAAAAAAAAT
Done.