Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008112.1 Corchorus olitorius cultivar O-4 contig08139, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747

Length: 1245
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35


Found at i:396 original size:18 final size:19

Alignment explanation


    Indices: 349--399  Score: 59
    Period size: 20  Copynumber: 2.6  Consensus size: 19

        339 TTCACATCTA

                              * 
        349 ATAAGGTTACTAAAAAAACT
          1 ATAAGGTTA-TAAAAAAAAT

                 *              
        369 ATAGACGTTATAAAAAAAAT
          1 ATA-AGGTTATAAAAAAAAT

                        
        389 -TAAGGTTATAA
          1 ATAAGGTTATAA

        400 TTTCAATGTT


Statistics
Matches: 27,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  18    8  0.30
  19    2  0.07
  20   12  0.44
  21    5  0.19

ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27


Consensus pattern (19 bp):   
ATAAGGTTATAAAAAAAAT

Found at i:918 original size:18 final size:18

Alignment explanation


    Indices: 895--940  Score: 56
    Period size: 18  Copynumber: 2.6  Consensus size: 18

        885 TGAAATTAAT

                              
        895 TAATTATTAATTAAATAA
          1 TAATTATTAATTAAATAA

                    **  *     
        913 TAATTATTTTTTGAATAA
          1 TAATTATTAATTAAATAA

             *        
        931 TTATTATTAA
          1 TAATTATTAA

        941 ATTTCTAGTG


Statistics
Matches: 22,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52


Consensus pattern (18 bp):   
TAATTATTAATTAAATAA
Done.