Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008113.1 Corchorus olitorius cultivar O-4 contig08140, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2619
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36


Found at i:2043 original size:24 final size:25

Alignment explanation


    Indices: 2016--2062  Score: 87
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       2006 AATACTTACA

                                     
       2016 TTAATT-AAATTCTTAGGTATTTTT
          1 TTAATTCAAATTCTTAGGTATTTTT

                                   
       2040 TTAATTCAAATTCTTAGGTATTT
          1 TTAATTCAAATTCTTAGGTATTT

       2063 GTGCAAACGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  24    6  0.27
  25   16  0.73

ACGTcount: A:0.30, C:0.06, G:0.09, T:0.55


Consensus pattern (25 bp):   
TTAATTCAAATTCTTAGGTATTTTT

Done.