Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008115.1 Corchorus olitorius cultivar O-4 contig08142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1055
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29


Found at i:481 original size:21 final size:21

Alignment explanation


    Indices: 457--590  Score: 175
    Period size: 21  Copynumber: 6.4  Consensus size: 21

        447 CTTAGGCAAT

                         *        
        457 TCCAATGAGCTTGAAACCTT-C
          1 TCCAATGAGCTTGGAA-CTTGC

                    *             
        478 TCCAATGATCTTGGAACCTT-C
          1 TCCAATGAGCTTGGAA-CTTGC

                    *             
        499 TCCAATGAACTTGGAACCTT-C
          1 TCCAATGAGCTTGGAA-CTTGC

                    *            
        520 TCCAATGAACTTGGAACTTGC
          1 TCCAATGAGCTTGGAACTTGC

                                 
        541 TCCAATGAGCTTGGAACTTGC
          1 TCCAATGAGCTTGGAACTTGC

                         *       
        562 TCCAATGAGCTTGAAACTTGC
          1 TCCAATGAGCTTGGAACTTGC

                    
        583 TCCAATGA
          1 TCCAATGA

        591 ACTTCTAGCA


Statistics
Matches: 107,  Mismatches: 5, Indels: 2
        0.94            0.04        0.02

Matches are distributed among these distances:
  20    3  0.03
  21  104  0.97

ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29


Consensus pattern (21 bp):   
TCCAATGAGCTTGGAACTTGC

Done.