Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008117.1 Corchorus olitorius cultivar O-4 contig08144, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1797
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27


Found at i:372 original size:21 final size:21

Alignment explanation


    Indices: 346--387  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        336 GCATCTTAGA

                                 
        346 CAACTCCGATAAGCTTGAAAC
          1 CAACTCCGATAAGCTTGAAAC

                  *   *          
        367 CAACTCTGATGAGCTTGAAAC
          1 CAACTCCGATAAGCTTGAAAC

        388 TTCTTCCTTA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21


Consensus pattern (21 bp):   
CAACTCCGATAAGCTTGAAAC
Done.