Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008118.1 Corchorus olitorius cultivar O-4 contig08145, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 872

Length: 1454
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33


Found at i:1071 original size:32 final size:32

Alignment explanation


    Indices: 1030--1090  Score: 113
    Period size: 32  Copynumber: 1.9  Consensus size: 32

       1020 AAATATGTTT

                              *             
       1030 GAAAAATAAGGATATAATGGTCGATTCAATTA
          1 GAAAAATAAGGATATAATAGTCGATTCAATTA

                                         
       1062 GAAAAATAAGGATATAATAGTCGATTCAA
          1 GAAAAATAAGGATATAATAGTCGATTCAA

       1091 AAGTTTTACA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   28  1.00

ACGTcount: A:0.49, C:0.07, G:0.18, T:0.26


Consensus pattern (32 bp):   
GAAAAATAAGGATATAATAGTCGATTCAATTA
Done.