Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008124.1 Corchorus olitorius cultivar O-4 contig08151, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 670

Length: 1117
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40


Found at i:583 original size:58 final size:57

Alignment explanation


    Indices: 489--602  Score: 176
    Period size: 58  Copynumber: 2.0  Consensus size: 57

        479 ATTAATCAAA

                                                         *           
        489 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAGACGTTTTCGGACCAAGACT
          1 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAGACGTTTTAGGACCAAGACT

                *            *                                        
        546 TATCGAGTGACATGTTTTTTTATTAGATGGC-TAAAAAAGACGTTTTAGGACCAAGAC
          1 TATCAAGTGACATG-TTCTTTATTAGAT-GCATAAAAAAGACGTTTTAGGACCAAGAC

        603 ATGATGCTAT


Statistics
Matches: 52,  Mismatches: 3, Indels: 3
        0.90            0.05        0.05

Matches are distributed among these distances:
  57   13  0.25
  58   37  0.71
  59    2  0.04

ACGTcount: A:0.34, C:0.14, G:0.19, T:0.32


Consensus pattern (57 bp):   
TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAGACGTTTTAGGACCAAGACT
Done.