Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008125.1 Corchorus olitorius cultivar O-4 contig08152, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 668

Length: 1114
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.38


Found at i:227 original size:27 final size:27

Alignment explanation


    Indices: 152--234  Score: 121
    Period size: 30  Copynumber: 3.0  Consensus size: 27

        142 ATATTACTAA

                         *             
        152 TAATAATTATTATTATAATAATAAGTT
          1 TAATAATTATTATAATAATAATAAGTT

                      *                   
        179 TAATAATTATAATACCACTAATAATAAGTT
          1 TAATAATTATTATA--A-TAATAATAAGTT

                                      
        209 TAATAATTATTATAATAATAATAAGT
          1 TAATAATTATTATAATAATAATAAGT

        235 CTAAATTAAC


Statistics
Matches: 50,  Mismatches: 3, Indels: 6
        0.85            0.05        0.10

Matches are distributed among these distances:
  27   23  0.46
  28    1  0.02
  29    1  0.02
  30   25  0.50

ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42


Consensus pattern (27 bp):   
TAATAATTATTATAATAATAATAAGTT

Found at i:849 original size:14 final size:14

Alignment explanation


    Indices: 830--857  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        820 GATCTCTGAT

                          
        830 GCAAAAAATAAGAA
          1 GCAAAAAATAAGAA

                          
        844 GCAAAAAATAAGAA
          1 GCAAAAAATAAGAA

        858 TAAGATTATC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.71, C:0.07, G:0.14, T:0.07


Consensus pattern (14 bp):   
GCAAAAAATAAGAA
Done.