Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008134.1 Corchorus olitorius cultivar O-4 contig08161, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1095
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30


Found at i:22 original size:12 final size:12

Alignment explanation


    Indices: 5--29  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

          1 TATA

                        
          5 AAATAAAATAGC
          1 AAATAAAATAGC

                        
         17 AAATAAAATAGC
          1 AAATAAAATAGC

             
         29 A
          1 A

         30 CCTCACTTTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16


Consensus pattern (12 bp):   
AAATAAAATAGC
Done.