Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008153.1 Corchorus olitorius cultivar O-4 contig08180, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2429
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36


Found at i:2279 original size:2 final size:2

Alignment explanation


    Indices: 2272--2325  Score: 83
    Period size: 2  Copynumber: 27.5  Consensus size: 2

       2262 CTTGAACTAG

                                     *                    *               
       2272 TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TG TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                               
       2314 TA TA TA T- TA TA T
          1 TA TA TA TA TA TA T

       2326 GATTCAAATA


Statistics
Matches: 47,  Mismatches: 4, Indels: 2
        0.89            0.08        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   46  0.98

ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52


Consensus pattern (2 bp):   
TA

Done.