Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008156.1 Corchorus olitorius cultivar O-4 contig08183, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 686

Length: 1144
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38


Found at i:393 original size:18 final size:18

Alignment explanation


    Indices: 333--393  Score: 50
    Period size: 18  Copynumber: 3.2  Consensus size: 18

        323 TACCTAAGAA

                              
        333 TTTAATTAATGTAAGTAT
          1 TTTAATTAATGTAAGTAT

              * *   * *     *   
        351 TTCAGTTATTATAATATTAT
          1 TTTAATTAATGT-A-AGTAT

                               
        371 ATTTAATTAATGTAAGTAT
          1 -TTTAATTAATGTAAGTAT

                
        390 TTTA
          1 TTTA

        394 GTTATTATTT


Statistics
Matches: 30,  Mismatches: 10, Indels: 6
        0.65            0.22        0.13

Matches are distributed among these distances:
  18   12  0.40
  19    5  0.17
  20    5  0.17
  21    8  0.27

ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52


Consensus pattern (18 bp):   
TTTAATTAATGTAAGTAT
Done.