Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008157.1 Corchorus olitorius cultivar O-4 contig08184, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1262
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38


Found at i:461 original size:21 final size:21

Alignment explanation


    Indices: 395--461  Score: 57
    Period size: 21  Copynumber: 3.2  Consensus size: 21

        385 TAAGAATTTA

                        *        
        395 ATTAATGTAAGTGTTTTAGTT
          1 ATTAATGTAAGTATTTTAGTT

                       *    ** *  
        416 ATT-ATAGT-ATTATTACATTT
          1 ATTAAT-GTAAGTATTTTAGTT

                                  
        436 AATTAATGTAAGTATTTTAGTT
          1 -ATTAATGTAAGTATTTTAGTT

                
        458 ATTA
          1 ATTA

        462 TTTATATTAC


Statistics
Matches: 33,  Mismatches: 9, Indels: 8
        0.66            0.18        0.16

Matches are distributed among these distances:
  20    9  0.27
  21   14  0.42
  22   10  0.30

ACGTcount: A:0.34, C:0.01, G:0.12, T:0.52


Consensus pattern (21 bp):   
ATTAATGTAAGTATTTTAGTT
Done.