Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008160.1 Corchorus olitorius cultivar O-4 contig08187, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4402
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34


Found at i:359 original size:32 final size:32

Alignment explanation


    Indices: 298--361  Score: 92
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        288 AAAGAAGATT

                                **  *       
        298 ATATATTTTTTATGTTATACGTTATAAATTAA
          1 ATATATTTTTTATGTTATACACTACAAATTAA

                               *            
        330 ATATATTTTTTATGTTATATACTACAAATTAA
          1 ATATATTTTTTATGTTATACACTACAAATTAA

        362 TGTAATTTAT


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  32   28  1.00

ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52


Consensus pattern (32 bp):   
ATATATTTTTTATGTTATACACTACAAATTAA
Done.