Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008161.1 Corchorus olitorius cultivar O-4 contig08188, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1058
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37


Found at i:896 original size:59 final size:59

Alignment explanation


    Indices: 833--950  Score: 202
    Period size: 59  Copynumber: 2.0  Consensus size: 59

        823 TTTACAATTG

                     *                                    *             
        833 AAAAAAA-TGACTTCAACATGATCAAATATACAATCGATGTTATATGAAAGAAGAACAAC
          1 AAAAAAATTAACTTCAACATG-TCAAATATACAATCGATGTTATATAAAAGAAGAACAAC

                                                                       
        892 AAAAAAATTAACTTCAACATGTCAAATATACAATCGATGTTATATAAAAGAAGAACAAC
          1 AAAAAAATTAACTTCAACATGTCAAATATACAATCGATGTTATATAAAAGAAGAACAAC

        951 GATGATGTCT


Statistics
Matches: 56,  Mismatches: 2, Indels: 2
        0.93            0.03        0.03

Matches are distributed among these distances:
  59   44  0.79
  60   12  0.21

ACGTcount: A:0.53, C:0.14, G:0.10, T:0.23


Consensus pattern (59 bp):   
AAAAAAATTAACTTCAACATGTCAAATATACAATCGATGTTATATAAAAGAAGAACAAC

Done.