Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008169.1 Corchorus olitorius cultivar O-4 contig08196, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 857

Length: 1429
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40


Found at i:1001 original size:30 final size:33

Alignment explanation


    Indices: 924--990  Score: 116
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        914 GGGATGTCTC

                       *                     
        924 TGATTCCGTCTATGACTGTCAGAAACAGATTTG
          1 TGATTCCGTCTCTGACTGTCAGAAACAGATTTG

                                       *     
        957 TGATTCCGTCTCTGACTGTCAGAAACATATTTG
          1 TGATTCCGTCTCTGACTGTCAGAAACAGATTTG

             
        990 T
          1 T

        991 TCTGTCTCTG


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   32  1.00

ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36


Consensus pattern (33 bp):   
TGATTCCGTCTCTGACTGTCAGAAACAGATTTG
Done.