Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008170.1 Corchorus olitorius cultivar O-4 contig08197, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 832

Length: 1388
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37


Found at i:1121 original size:20 final size:20

Alignment explanation


    Indices: 1091--1128  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1081 TAATTAATTG

                                
       1091 TTTTAATATTA-ATTTTTTA
          1 TTTTAATATTATATTTTTTA

                               
       1110 TTTTATATATTATATTTTT
          1 TTTTA-ATATTATATTTTT

       1129 ACTTAAAAAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  19    5  0.29
  20    6  0.35
  21    6  0.35

ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71


Consensus pattern (20 bp):   
TTTTAATATTATATTTTTTA
Done.