Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008173.1 Corchorus olitorius cultivar O-4 contig08200, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1148
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:673 original size:19 final size:19

Alignment explanation


    Indices: 633--669  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        623 AATTTTTAAG

                               
        633 TAAAAATTTAATATATAAA
          1 TAAAAATTTAATATATAAA

                               
        652 TAAAAATTTAATAT-TAAA
          1 TAAAAATTTAATATATAAA

        670 ATAATTAATT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  18    4  0.22
  19   14  0.78

ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38


Consensus pattern (19 bp):   
TAAAAATTTAATATATAAA
Done.