Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008176.1 Corchorus olitorius cultivar O-4 contig08203, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1988
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.35


Found at i:1736 original size:22 final size:22

Alignment explanation


    Indices: 1695--1736  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1685 AACAAACCTG

                           *      
       1695 TAACCCGAATGACCCGAGAAAT
          1 TAACCCGAATGACCCAAGAAAT

                   *    *       
       1717 TAACCCGGATGATCCAAGAA
          1 TAACCCGAATGACCCAAGAA

       1737 TATCTATACT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   17  1.00

ACGTcount: A:0.40, C:0.26, G:0.19, T:0.14


Consensus pattern (22 bp):   
TAACCCGAATGACCCAAGAAAT
Done.