Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008180.1 Corchorus olitorius cultivar O-4 contig08207, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1872
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27


Found at i:382 original size:52 final size:51

Alignment explanation


    Indices: 279--382  Score: 131
    Period size: 52  Copynumber: 2.0  Consensus size: 51

        269 GTCCTTCATA

                                                      * **     
        279 TTTTTCTTGTTTTAGATCTTGTCTCCGGACAAACAAACACTCTTTTAGTGT
          1 TTTTTCTTGTTTTAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGT

                                             *                    
        330 TTTTCTCTTGTTTTCA-ATCTTGTCTCCGGACATACAAACACT-GTACACGTGT
          1 TTTT-TCTTGTTTT-AGATCTTGTCTCCGGACAAACAAACACTCGTACA-GTGT

             
        382 T
          1 T

        383 CTTCATTTAG


Statistics
Matches: 46,  Mismatches: 4, Indels: 5
        0.84            0.07        0.09

Matches are distributed among these distances:
  51    6  0.13
  52   39  0.85
  53    1  0.02

ACGTcount: A:0.21, C:0.22, G:0.13, T:0.43


Consensus pattern (51 bp):   
TTTTTCTTGTTTTAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGT
Done.