Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008181.1 Corchorus olitorius cultivar O-4 contig08208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3248
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.24


Found at i:2971 original size:259 final size:259

Alignment explanation


    Indices: 2511--3010  Score: 955
    Period size: 259  Copynumber: 1.9  Consensus size: 259

       2501 GAAGATAGTT

                                             *                               
       2511 ATGGAGGAGAACCAAAAGTTGCGGAACATGATGTAGGAGAGATTCAAAAGCATAGAGGGCGGGAA
          1 ATGGAGGAGAACCAAAAGTTGCGGAACATGATGGAGGAGAGATTCAAAAGCATAGAGGGCGGGAA

                                                                             
       2576 AGGCTATTTTGGGACAATGGACATGACTAAGATAGCTCTAGTAACTGATCTGGTGATACCCCCCA
         66 AGGCTATTTTGGGACAATGGACATGACTAAGATAGCTCTAGTAACTGATCTGGTGATACCCCCCA

                                     *                                       
       2641 AATTTAAGGTCCCCGAATTTGAAAAGTTCAACGGGTCCAAATGCCCAAGAGAACACGTCACCACA
        131 AATTTAAGGTCCCCGAATTTGAAAAATTCAACGGGTCCAAATGCCCAAGAGAACACGTCACCACA

                                                                            
       2706 TATGCCCGGAAAATGCAGCCTTTCACTAGTGACGAGAAGATGTTCAAAAGCATAGAGATTCATG
        196 TATGCCCGGAAAATGCAGCCTTTCACTAGTGACGAGAAGATGTTCAAAAGCATAGAGATTCATG

                          *                                                  
       2770 ATGGAGGAGAACCAGAAGTTGCGGAACATGATGGAGGAGAGATTCAAAAGCATAGAGGGCGGGAA
          1 ATGGAGGAGAACCAAAAGTTGCGGAACATGATGGAGGAGAGATTCAAAAGCATAGAGGGCGGGAA

                                                                             
       2835 AGGCTATTTTGGGACAATGGACATGACTAAGATAGCTCTAGTAACTGATCTGGTGATACCCCCCA
         66 AGGCTATTTTGGGACAATGGACATGACTAAGATAGCTCTAGTAACTGATCTGGTGATACCCCCCA

                                                         *                  *
       2900 AATTTAAGGTCCCCGAATTTGAAAAATTCAACGGGTCCAAATGCCTAAGAGAACACGTCACCACG
        131 AATTTAAGGTCCCCGAATTTGAAAAATTCAACGGGTCCAAATGCCCAAGAGAACACGTCACCACA

                                                          
       2965 TATGCCCGGAAAATGCAGCCTTTCACTAGTGACGAGAAGATGTTCA
        196 TATGCCCGGAAAATGCAGCCTTTCACTAGTGACGAGAAGATGTTCA

       3011 TCCACTATTT


Statistics
Matches: 236,  Mismatches: 5, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 259  236  1.00

ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20


Consensus pattern (259 bp):   
ATGGAGGAGAACCAAAAGTTGCGGAACATGATGGAGGAGAGATTCAAAAGCATAGAGGGCGGGAA
AGGCTATTTTGGGACAATGGACATGACTAAGATAGCTCTAGTAACTGATCTGGTGATACCCCCCA
AATTTAAGGTCCCCGAATTTGAAAAATTCAACGGGTCCAAATGCCCAAGAGAACACGTCACCACA
TATGCCCGGAAAATGCAGCCTTTCACTAGTGACGAGAAGATGTTCAAAAGCATAGAGATTCATG
Done.