Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008182.1 Corchorus olitorius cultivar O-4 contig08209, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1090
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38


Found at i:392 original size:22 final size:22

Alignment explanation


    Indices: 349--395  Score: 58
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        339 AAGGGTTTAG

                         *  *     
        349 AAGAGAAAGAAAATAAGATGAA
          1 AAGAGAAAGAAAACAACATGAA

                     *       *    
        371 AAGAGAAAGGAAACAACTTGAA
          1 AAGAGAAAGAAAACAACATGAA

               
        393 AAG
          1 AAG

        396 TATTTATTAT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.64, C:0.04, G:0.23, T:0.09


Consensus pattern (22 bp):   
AAGAGAAAGAAAACAACATGAA
Done.