Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008190.1 Corchorus olitorius cultivar O-4 contig08217, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 636

Length: 1061
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35


Found at i:927 original size:29 final size:29

Alignment explanation


    Indices: 895--958  Score: 76
    Period size: 29  Copynumber: 2.2  Consensus size: 29

        885 TATAAGGATA

                            *             
        895 TTAGATTTAATTAA-ATAAAAATAGAGTTT
          1 TTAG-TTTAATTAACACAAAAATAGAGTTT

                   **     *              
        924 TTAGTTTTTTTAACCCAAAAATAGAGTTT
          1 TTAGTTTAATTAACACAAAAATAGAGTTT

                  
        953 TTAGTT
          1 TTAGTT

        959 GAGTAAAACT


Statistics
Matches: 30,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  28    7  0.23
  29   23  0.77

ACGTcount: A:0.39, C:0.05, G:0.11, T:0.45


Consensus pattern (29 bp):   
TTAGTTTAATTAACACAAAAATAGAGTTT
Done.