Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008197.1 Corchorus olitorius cultivar O-4 contig08224, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1231
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31


Found at i:597 original size:34 final size:37

Alignment explanation


    Indices: 529--598  Score: 101
    Period size: 37  Copynumber: 1.9  Consensus size: 37

        519 GCTACCTTGT

                                                  
        529 GCGCGGGCTGAGGCAGCAGCAGCGACCTGCTGCTGCGC
          1 GCGCGGGCTGAGGCAGCAGCAGCGACCT-CTGCTGCGC

                            *                  
        567 GCGCGGGCT-AGGCAGTAGCAGCGA-CT-TGCTGC
          1 GCGCGGGCTGAGGCAGCAGCAGCGACCTCTGCTGC

        599 TTGGCGCGGA


Statistics
Matches: 31,  Mismatches: 1, Indels: 4
        0.86            0.03        0.11

Matches are distributed among these distances:
  34    6  0.19
  36    2  0.06
  37   14  0.45
  38    9  0.29

ACGTcount: A:0.14, C:0.31, G:0.41, T:0.13


Consensus pattern (37 bp):   
GCGCGGGCTGAGGCAGCAGCAGCGACCTCTGCTGCGC
Done.