Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000820.1 Corchorus olitorius cultivar O-4 contig00820, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27


Found at i:678 original size:18 final size:19

Alignment explanation


    Indices: 652--689  Score: 60
    Period size: 18  Copynumber: 2.1  Consensus size: 19

        642 GCACCCTAGC

                               
        652 ACTAAAACTAGAAGA-AAA
          1 ACTAAAACTAGAAGAGAAA

                *              
        670 ACTAGAACTAGAAGAGAAA
          1 ACTAAAACTAGAAGAGAAA

             
        689 A
          1 A

        690 AGAAGAAGAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18   14  0.78
  19    4  0.22

ACGTcount: A:0.63, C:0.11, G:0.16, T:0.11


Consensus pattern (19 bp):   
ACTAAAACTAGAAGAGAAA
Done.