Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008201.1 Corchorus olitorius cultivar O-4 contig08228, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 709

Length: 1183
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35


Found at i:233 original size:13 final size:14

Alignment explanation


    Indices: 209--237  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

        199 GATTTTTTAC

                          
        209 ATAATGAATAATTA
          1 ATAATGAATAATTA

                          
        223 ATAAT-AATAATTA
          1 ATAATGAATAATTA

              
        236 AT
          1 AT

        238 CAGTATTTTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13   10  0.67
  14    5  0.33

ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38


Consensus pattern (14 bp):   
ATAATGAATAATTA
Done.