Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008204.1 Corchorus olitorius cultivar O-4 contig08231, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2974
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34


Found at i:584 original size:21 final size:21

Alignment explanation


    Indices: 560--606  Score: 76
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        550 ACTGAAATGG

                                 
        560 TGAGATTAAATACTGTACAGA
          1 TGAGATTAAATACTGTACAGA

                    *   *        
        581 TGAGATTAGATATTGTACAGA
          1 TGAGATTAAATACTGTACAGA

                 
        602 TGAGA
          1 TGAGA

        607 ATATAATTAG


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.40, C:0.06, G:0.23, T:0.30


Consensus pattern (21 bp):   
TGAGATTAAATACTGTACAGA

Found at i:1076 original size:21 final size:22

Alignment explanation


    Indices: 1036--1076  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

       1026 GACAAACTCG

                           *      
       1036 TAACCCGAATAACCCGAGAAGA
          1 TAACCCGAATAACCCAAGAAGA

                      *         
       1058 TAACCCG-ATGACCCAAGAA
          1 TAACCCGAATAACCCAAGAA

       1077 TATTATAAAC


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   10  0.59
  22    7  0.41

ACGTcount: A:0.44, C:0.29, G:0.17, T:0.10


Consensus pattern (22 bp):   
TAACCCGAATAACCCAAGAAGA
Done.