Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000822.1 Corchorus olitorius cultivar O-4 contig00822, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 848

Length: 1414
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:555 original size:29 final size:30

Alignment explanation


    Indices: 521--583  Score: 94
    Period size: 29  Copynumber: 2.1  Consensus size: 30

        511 CGTTTGGATG

                                           
        521 TTTTACTCCC-TGAATTTCAATTTT-GGACA
          1 TTTTAC-CCCTTGAATTTCAATTTTAGGACA

                                         *
        550 TTTTACCCCTTGAATTTCAATTTTAGGACG
          1 TTTTACCCCTTGAATTTCAATTTTAGGACA

                
        580 TTTT
          1 TTTT

        584 GCCCATTCAA


Statistics
Matches: 31,  Mismatches: 1, Indels: 3
        0.89            0.03        0.09

Matches are distributed among these distances:
  28    3  0.10
  29   20  0.65
  30    8  0.26

ACGTcount: A:0.22, C:0.19, G:0.11, T:0.48


Consensus pattern (30 bp):   
TTTTACCCCTTGAATTTCAATTTTAGGACA
Done.