Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008221.1 Corchorus olitorius cultivar O-4 contig08248, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35


Found at i:433 original size:2 final size:2

Alignment explanation


    Indices: 426--459  Score: 50
    Period size: 2  Copynumber: 16.5  Consensus size: 2

        416 AAGACAGCTC

                                                     *        
        426 AT AT AT AT AT AT AT AT AT AT AT ACT AT AA AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT A

        460 AATACGAATA


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
   2   27  0.93
   3    2  0.07

ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44


Consensus pattern (2 bp):   
AT

Done.