Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01008223.1 Corchorus olitorius cultivar O-4 contig08250, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1166
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:668 original size:25 final size:26

Alignment explanation


    Indices: 620--675  Score: 71
    Period size: 27  Copynumber: 2.2  Consensus size: 26

        610 TAACTCCTAC

                           *   *      
        620 ATATATTCCATATATTTTTTAGGTAG
          1 ATATATTCCATATATATTTAAGGTAG

                                       
        646 AATATATTCCATA-A-ATTTAAGGTAG
          1 -ATATATTCCATATATATTTAAGGTAG

                 
        671 ATATA
          1 ATATA

        676 AATTATAATC


Statistics
Matches: 27,  Mismatches: 2, Indels: 3
        0.84            0.06        0.09

Matches are distributed among these distances:
  24    5  0.19
  25    9  0.33
  26    1  0.04
  27   12  0.44

ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43


Consensus pattern (26 bp):   
ATATATTCCATATATATTTAAGGTAG

Found at i:739 original size:9 final size:9

Alignment explanation


    Indices: 725--757  Score: 50
    Period size: 9  Copynumber: 3.7  Consensus size: 9

        715 ATAAGAGATT

                     
        725 AATATATAA
          1 AATATATAA

                      
        734 AATATAATAA
          1 AATAT-ATAA

                     
        744 AA-ATATAA
          1 AATATATAA

                  
        752 AATATA
          1 AATATA

        758 ACGAAGACCC


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
   8    6  0.27
   9   10  0.45
  10    6  0.27

ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30


Consensus pattern (9 bp):   
AATATATAA
Done.