Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000823.1 Corchorus olitorius cultivar O-4 contig00823, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1886
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39


Found at i:962 original size:7 final size:7

Alignment explanation


    Indices: 950--988  Score: 53
    Period size: 7  Copynumber: 5.4  Consensus size: 7

        940 AAGTTATTAG

                   
        950 TATCATA
          1 TATCATA

                   
        957 TATCATA
          1 TATCATA

                     
        964 TATCATATA
          1 TATC--ATA

                   
        973 TATCATA
          1 TATCATA

                   
        980 TAT-ATA
          1 TATCATA

               
        986 TAT
          1 TAT

        989 TGATAACAAT


Statistics
Matches: 30,  Mismatches: 0, Indels: 5
        0.86            0.00        0.14

Matches are distributed among these distances:
   6    6  0.20
   7   17  0.57
   9    7  0.23

ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46


Consensus pattern (7 bp):   
TATCATA
Done.